Continuous Tests¶
This page outlines the success and failure criteria for all tests of Continuous resources.
Continuous API Tests¶
Continuous API tests assert the correct configuration of continuous-related API routes. In order for a test case to succeed, the following conditions must be met when evaluating the response:
For all cases,
Content-Type
checking is enforced. For most routes, a value ofapplication/vnd.ga4gh.rnaget.v1.0.0+json
ORapplication/json
is expected. For the/continuous/<id>
endpoint, a content type matching the format of the file attachment is expected.For all cases,
Status Code
checking is enforced. The response MUST have the expected status codeFor all cases, schema checking is enforced. The json object in the response body MUST conform to a pre-defined schema of required fields and data types, which is specific to each API route
Continuous API Test Cases¶
Get Supported Continuous Formats¶
Route:
/continuous/formats
Description: Requests the available continuous file formats on the server. Expects an array of strings to be returned in the response body.
Rationale: Asserts that
/continuous/formats
returns an array of strings, indicating which continuous file formats the server supportsRequest:
GET /continuous/formats
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
[
"loom",
"tsv"
]
Success Criteria:
Status Code == 200
AND response body is an array of strings in json formatFailure Criteria:
Status Code != 200
OR response body is NOT an array of strings in json format
Continuous Filters¶
Route:
/continuous/filters
Description: Requests the filters that can be used to narrow search results for a list of
Continuous
Rationale: Asserts that the endpoint returns an array of
filters
Request:
GET /continuous/filters
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
[
{
"fieldType": "string",
"values": [
"1.0"
],
"filter": "version",
"description": "version to search for"
},
{
"fieldType": "string",
"filter": "studyID",
"description": "parent studyID"
}
]
Success Criteria:
Status Code == 200
AND response body is array offilters
Failure Criteria:
Status Code != 200
OR response body is NOT array offilters
Get Test Continuous Ticket¶
Route:
/continuous/<id>/ticket
Description: Requests continuous ticket by its
id
. Expects validticket
.Rationale: Asserts that
/continuous/<id>/ticket
returns validticket
.Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/ticket
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"id": "5e22e009f41fc53cbea094a41de8798f",
"version": "1.0",
"studyID": "f3ba0b59bed0fa2f1030e7cb508324d1",
"url": "https://url/to/continuous/file",
"units": "TPM",
"fileType": "loom/tsv"
}
Success Criteria:
Status Code == 200
AND response isticket
Failure Criteria:
Status Code != 200
OR response is NOTticket
Single Continuous Ticket - Not Found¶
Route:
/continuous/<id>/ticket
Description: Requests continuous ticket with an invalid
id
. Expects a404 Not Found
status code in the response, and error message.Rationale: Asserts that the
/continuous/<id>/ticket
endpoint does not return arbitraryticket
.Request:
GET /continuous/nonexistentid9999999999999999999/ticket
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 404 Not Found
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "Entry not found in database."
}
Success Criteria:
Status Code == 404
AND response body is validError
jsonFailure Criteria:
Status Code != 404
OR response body is NOT validError
json
Single Continuous Ticket - Start Specified Without Chr¶
Route:
/continuous/<id>/ticket
Description: Requests continuous ticket by its id, specifying a start position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/ticket
endpoint raises an error whenstart
is specified withoutchr
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/ticket?start=5
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Single Continuous Ticket - End Specified Without Chr¶
Route:
/continuous/<id>/ticket
Description: Requests test continuous by its id, specifying an end position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/ticket
endpoint raises an error whenend
is specified withoutchr
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/ticket?end=1000
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Single Continuous Ticket - Start Greater Than End¶
Route:
/continuous/<id>/ticket
Description: Requests test continuous ticket by its id, specifying
chr
,start
, andend
, however,start
position is greater thanend
. Expects a400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/ticket
endpoint raises an error whenstart
is greater thanend
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/ticket?chr=1&start=200&end=100
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "start cannot be greater than end"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Get Test Continuous Bytes¶
Route:
/continuous/<id>/bytes
Description: Requests continuous matrix bytes by its
id
.Rationale: Asserts that
/continuous/<id>/bytes
returns matrix bytes.Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/bytes
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/octet-stream
Success Criteria:
Status Code == 200
Failure Criteria:
Status Code != 200
Single Continuous Bytes - Not Found¶
Route:
/continuous/<id>/bytes
Description: Requests continuous bytes with an invalid
id
. Expects a404 Not Found
status code in the response, and error message.Rationale: Asserts that the
/continuous/<id>/bytes
endpoint does not return arbitrary matrix.Request:
GET /continuous/nonexistentid9999999999999999999/bytes
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 404 Not Found
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "Entry not found in database."
}
Success Criteria:
Status Code == 404
AND response body is validError
jsonFailure Criteria:
Status Code != 404
OR response body is NOT validError
json
Single Continuous Bytes - Start Specified Without Chr¶
Route:
/continuous/<id>/bytes
Description: Requests continuous matrix bytes by its id, specifying a start position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/bytes
endpoint raises an error whenstart
is specified withoutchr
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/bytes?start=5
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Single Continuous Bytes - End Specified Without Chr¶
Route:
/continuous/<id>/bytes
Description: Requests test continuous matrix bytes by its id, specifying an end position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/bytes
endpoint raises an error whenend
is specified withoutchr
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/bytes?end=1000
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Single Continuous Bytes - Start Greater Than End¶
Route:
/continuous/<id>/bytes
Description: Requests test continuous matrix bytes by its id, specifying
chr
,start
, andend
, however,start
position is greater thanend
. Expects a400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/<id>/bytes
endpoint raises an error whenstart
is greater thanend
Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/bytes?chr=1&start=200&end=100
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "start cannot be greater than end"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Ticket by Format¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix, specifying only the required ‘format’ parameter. Expects
ticket
.Rationale: Asserts that
/continuous/ticket
returns aticket
with which the matrix can be downloaded.Request:
GET /continuous/ticket?format=loom
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"studyID": "6cccbbd76b9c4837bd7342dd616d0fec",
"url": "/path/to/signal-query-results.loom",
"units": "TPM",
"version": "1.0",
"fileType": "loom"
}
Success Criteria:
Status Code == 200
AND response body isticket
Failure Criteria:
Status Code != 200
OR response body is NOTticket
Continuous Ticket - All Filters¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix, using all filtering parameters. Expects
ticket
.Rationale: Asserts that
/continuous/ticket
returnsticket
when specifying filters.Request:
GET /continuous/ticket?format=loom&version=1.0&studyID=f3ba0b59bed0fa2f1030e7cb508324d1
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"studyID": "f3ba0b59bed0fa2f1030e7cb508324d1",
"url": "/path/to/continuous.loom",
"units": "TPM",
"version": "1.0",
"fileType": "loom"
}
Success Criteria:
Status Code == 200
AND response body isticket
Failure Criteria:
Status Code != 200
OR response body is NOTticket
Continuous Ticket - Single Filter, 1¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix, using only 1 filtering parameter associated with test continuous (in addition to format). Expects
ticket
.Rationale: Asserts filtering parameters can be used independently of one another, and that each filter yields a valid
ticket
.Requests:
GET /continuous/ticket?format=loom&version=1.0
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"url": "/path/to/signal-query-results.loom",
"units": "TPM",
"version": "1.0",
"fileType": "loom"
}
Success Criteria:
Status Code == 200
AND response body isticket
.Failure Criteria:
Status Code != 200
OR response body is NOTticket
.
Continuous Ticket - Single Filter, 2¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix, using only 1 filtering parameter (different than above) associated with test continuous (in addition to format). Expects
ticket
.Rationale: Asserts filtering parameters can be used independently of one another, and that each filter yields a valid
ticket
.Requests:
GET /continuous/ticket?format=loom&studyID=f3ba0b59bed0fa2f1030e7cb508324d1
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"studyID": "6cccbbd76b9c4837bd7342dd616d0fec",
"url": "/path/to/signal-query-results.loom",
"units": "TPM",
"fileType": "loom"
}
Success Criteria:
Status Code == 200
AND response body isticket
.Failure Criteria:
Status Code != 200
OR response body is NOTticket
.
Continuous Ticket - Format Not Specified¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix WITHOUT specifying the required
format
parameter. Expects a4xx
response with error message.Rationale: As the
format
parameter is required to specify file format for the/continuous/ticket
endpoint, this test asserts malformed requests raise an error.Request:
GET /continuous/ticket
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "Input payload validation failed"
}
Success Criteria:
Status Code == 4xx
AND response body is validError
jsonFailure Criteria:
Status Code != 4xx
AND response body is NOT validError
json
Continuous Ticket - Filetype Matches¶
Route:
/continuous/ticket
Description: Request joined continuous matrix, only specifying the required
format
parameter. Checks thatticket
has afileType
matching requestedformat
.Rationale: Asserts that the
/continuous/ticket
endpoint returnsticket
with fileType matching the request.Request:
GET /continuous/ticket?format=loom
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"studyID": "6cccbbd76b9c4837bd7342dd616d0fec",
"url": "/woldlab/castor/home/sau/public_html/rnaget/signal-query-results.loom",
"units": "TPM",
"version": "1.0",
"fileType": "loom"
}
Success Criteria:
Status Code == 200
AND response body isticket
ANDfileType
matches requestedformat
Failure Criteria:
Status Code != 200
OR response body is NOTticket
ORfileType
DOES NOT match requestedformat
Continuous Ticket - Start Specified Without Chr¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix ticket, specifying a start position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/ticket
endpoint raises an error whenstart
is specified withoutchr
Request:
GET /continuous/ticket?format=loom&start=5
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Ticket - End Specified Without Chr¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix ticket, specifying an end position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/ticket
endpoint raises an error whenend
is specified withoutchr
Request:
GET /continuous/ticket?format=loom&end=1000
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Ticket - Start Greater Than End¶
Route:
/continuous/ticket
Description: Requests joined continuous matrix ticket, specifying
chr
,start
, andend
, however,start
position is greater thanend
. Expects a400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/ticket
endpoint raises an error whenstart
is greater thanend
Request:
GET /continuous/ticket?format=loom&chr=1&start=200&end=100
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "start cannot be greater than end"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Bytes by Format¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, specifying only the required ‘format’ parameter.
Rationale: Asserts that
/continuous/bytes
returns matrix bytes.Request:
GET /continuous/bytes?format=loom
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/octet-stream
Success Criteria:
Status Code == 200
Failure Criteria:
Status Code != 200
Continuous Bytes - All Filters¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, using all filtering parameters.
Rationale: Asserts that
/continuous/ticket
returns matrix bytes when specifying filters.Request:
GET /continuous/bytes?format=loom&version=1.0&studyID=f3ba0b59bed0fa2f1030e7cb508324d1
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/octet-stream
Success Criteria:
Status Code == 200
Failure Criteria:
Status Code != 200
Continuous Bytes - Single Filter, 1¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, using only 1 filtering parameter associated with test continuous (in addition to format).
Rationale: Asserts filtering parameters can be used independently of one another.
Requests:
GET /continuous/bytes?format=loom&version=1.0
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/octet-stream
Success Criteria:
Status Code == 200
Failure Criteria:
Status Code != 200
Continuous Bytes - Single Filter, 2¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, using only 1 filtering parameter (different than above) associated with test continuous (in addition to format).
Rationale: Asserts filtering parameters can be used independently of one another.
Requests:
GET /continuous/bytes?format=loom&studyID=f3ba0b59bed0fa2f1030e7cb508324d1
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 200 OK
Content-Type: application/octet-stream
Success Criteria:
Status Code == 200
Failure Criteria:
Status Code != 200
Continuous Bytes - Format Not Specified¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes WITHOUT specifying the required
format
parameter. Expects a4xx
response with error message.Rationale: As the
format
parameter is required to specify file format for the/continuous/bytes
endpoint, this test asserts malformed requests raise an error.Request:
GET /continuous/bytes
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "Input payload validation failed"
}
Success Criteria:
Status Code == 4xx
AND response body is validError
jsonFailure Criteria:
Status Code != 4xx
AND response body is NOT validError
json
Continuous Bytes - Start Specified Without Chr¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, specifying a start position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/bytes
endpoint raises an error whenstart
is specified withoutchr
Request:
GET /continuous/bytes?format=loom&start=5
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Bytes - End Specified Without Chr¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, specifying an end position without a chromosome. Expects a
400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/bytes
endpoint raises an error whenend
is specified withoutchr
Request:
GET /continuous/bytes?format=loom&end=1000
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "chr required if either start or end is specified"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous Bytes - Start Greater Than End¶
Route:
/continuous/bytes
Description: Requests joined continuous matrix as bytes, specifying
chr
,start
, andend
, however,start
position is greater thanend
. Expects a400 Bad Request
status code in the response, and an error messageRationale: Asserts that the
/continuous/bytes
endpoint raises an error whenstart
is greater thanend
Request:
GET /continuous/bytes?format=loom&chr=1&start=200&end=100
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 400 Bad Request
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
{
"message": "start cannot be greater than end"
}
Success Criteria:
Status Code == 400
AND response body is validError
jsonFailure Criteria:
Status Code != 400
OR response body is NOT validError
json
Continuous API Non-Implemented Test Cases¶
Continuous Formats Not Implemented¶
Route:
/continuous/formats
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/formats
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/formats
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Ticket By Id Not Implemented¶
Route:
/continuous/<id>/ticket
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/<id>/ticket
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/nonexistentid9999999999999999999/ticket
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Bytes By Id Not Implemented¶
Route:
/continuous/<id>/bytes
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/<id>/bytes
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/nonexistentid9999999999999999999/bytes
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Filters Not Implemented¶
Route:
/continuous/filters
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/filters
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/filters
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Ticket Not Implemented¶
Route:
/continuous/ticket
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/ticket
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/ticket?format=loom
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Bytes Not Implemented¶
Route:
/continuous/bytes
Description: If
Continuous
endpoints areNot Implemented
, then request/continuous/bytes
, expecting a501 Not Implemented
status code responseRationale: Asserts that
Continuous
related endpoints are correctly non-implementedRequest:
GET /continuous/bytes?format=loom
Accept: application/octet-stream, application/vnd.loom, text/tab-separated-values
Successful Response:
HTTP/1.1 501 Not Implemented
Content-Type: application/vnd.ga4gh.rnaget.v1.0.0+json
Success Criteria:
Status Code == 501
Failure Criteria:
Status Code != 501
Continuous Content Tests¶
Continuous content tests assert that continuous matrices downloaded from the RNAget server contain the expected content based on the request. Continuous file tracks, positions, and intensity values are cross-referenced against the request to ensure the expected data has been returned.
Continuous Content Test Cases¶
Continuous Ticket by Id Content Test Cases¶
Route:
/continuous/<id>/ticket
Description: Download test continuous matrix by ticket multiple times (sometimes slicing by chr, start, end).
Rationale: Asserts correct matrix file is associated with the test continuous
id
. Validates signal intensity values match expected. Validates returned columns/rows match expected based on slice parameters.Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/ticket
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Success Criteria: Test continuous matrix columns, rows, values match expected
Failure Criteria: Test continuous matrix columns, rows, values DO NOT match expected
Continuous Bytes by Id Content Test Cases¶
Route:
/continuous/<id>/bytes
Description: Download test continuous matrix bytes multiple times (sometimes slicing by chr, start, end).
Rationale: Asserts correct matrix file is associated with the test continuous
id
. Validates signal intensity values match expected. Validates returned columns/rows match expected based on slice parameters.Request:
GET /continuous/5e22e009f41fc53cbea094a41de8798f/bytes
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Success Criteria: Test continuous matrix columns, rows, values match expected
Failure Criteria: Test continuous matrix columns, rows, values DO NOT match expected
Continuous Ticket Content Test Cases¶
Route:
/continuous/ticket
Description: Download joined continuous matrix by ticket multiple times (sometimes slicing by chr, start, end).
Rationale: Asserts joined matrix. Validates signal intensity values match expected. Validates returned columns/rows match expected based on slice parameters.
Request:
GET /continuous/ticket?format=loom
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Success Criteria: Joined continuous matrix columns, rows, values match expected
Failure Criteria: Joined continuous matrix columns, rows, values DO NOT match expected
Continuous Bytes Content Test Cases¶
Route:
/continuous/bytes
Description: Download joined continuous matrix as bytes multiple times (sometimes slicing by chr, start, end).
Rationale: Asserts joined matrix. Validates signal intensity values match expected. Validates returned columns/rows match expected based on slice parameters.
Request:
GET /continuous/bytes?format=loom
Accept: application/vnd.ga4gh.rnaget.v1.0.0+json, application/json
Success Criteria: Joined continuous matrix columns, rows, values match expected
Failure Criteria: Joined continuous matrix columns, rows, values DO NOT match expected